miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164576860|gb|AM858492.1|AM858492 CAGACGACGAGCTCGGAATTTCAGAAGAAGATGTCGACGAATTAAGCGAGCTTTTCCATCTAGCATCTAATTTTGTGCGA
TCTTCCACGAATAGCTTTAACCAAGAGCAGCTTCTCTATTTGTATGCTAGGTTTAAGCAGGCTAATGATGGACCTTGTTT
TGTTTCTAAGCCTGGAATGTTTGACTTTCAAGGGAAAAAAAAGTGGGAAGCATGGAAAAGCTTGGAAAATAAAACCAGAG
AGGAAGCAATGAAAGAGTATACATCGAAGGTGACCTTAACTGTGCCAGACTGGAATTTGCAGTTTGACGGGAGACAGGCT
GGTGATGGGTGGGTAGGTGTCAGCACAATGTCCAACACAGACACAGTGATTGAGGACAGAAACAAGACGGCCTTTGATTG
GTGCAAGGATGGGGATACAAAGCATCTACTGCACTATCTAAAGACCACCAAAACAAACATCAACAAACAGGATGAAAATG
GAATGACTATACTTCACTGGACATGTGATAGAGGCAACATTGAAATGTTAGATGCTCTTCTTGGCCTCAAAGCTGATCCA
AATATACAGGATAATGATGGACAAAGTCCTCTGCATTATGCGGTGAGTTGTGAGCACCAGGATATTGTGGAAAGACTGCT
GAAGACCAGCATCAACCTAAAGCTTCAGGATGTAGATGGTCTCACAATTACAGACATTGAAACCACTCCAGAGATAAAGC
ACTTGCTAGAACAATATGTTACCTGATATATGCTTCATTCATACGGATTTTAAGAACAGTTTATGAATTTACATGTCTTT
CATNCATTTTAAATGG




Most similar to sp|A2VDR2|ACBD6_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6
           OS=Bos taurus GN=ACBD6 PE=2 SV=1
          Length = 282

 Score =  193 bits (490), Expect = 1e-48
 Identities = 97/239 (40%), Positives = 148/239 (61%), Gaps = 5/239 (2%)
 Frame = +3

Query: 42  LSELFHLASNFVRSSTNSFNQEQLLYLYARFKQANDGPCFVSKPGMFDFQGKKKWEAWKS 221
           L ELF  A+  ++      ++EQLLYLYAR+KQ   G C   KP  FDF+GK+KWEAWK+
Sbjct: 42  LPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKA 101

Query: 222 LENKTREEAMKEYTSKVTLTVPDWNLQFD---GRQAGDGWVG--VSTMSNTDTVIEDRNK 386
           L + +  +AM+EY + V    P WN Q     G++A  G+ G  VS++ + + +I + +K
Sbjct: 102 LGDSSPSQAMQEYIAVVKKLDPSWNPQSPEKKGKEANTGFGGPVVSSLYHEE-IIREEDK 160

Query: 387 TAFDWCKDGDTKHLLHYLKTTKTNINKQDENGMTILHWTCDRGNIEMLDALLGLKADPNI 566
             FD+C++ +  H+   +KT   ++N +DE G T+LHW CDRG+ E++  LL  +AD N 
Sbjct: 161 DIFDYCRENNIDHITKVIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQYRADINC 220

Query: 567 QDNDGQSPLHYAVSCEHQDIVERLLKTSINLKLQDVDGLTITDIETTPEIKHLLEQYVT 743
           QDN+GQ+ LHYA +CE  DIVE LL++  +  L+D DG    ++     +  +L+Q+ T
Sbjct: 221 QDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLPEEVTGCKAVTLMLQQHTT 279